Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BRCA | rs35373513 | chr3:46312953 | C/T | 3.07E-6 | 1028 | 22.03 | 18.4 | 20.4 | KM Plot |
| BRCA | rs35416652 | chr20:2773077 | T/C | 4.06E-6 | 1014 | 21.95 | 21.08 | 10.82 | KM Plot |
| BRCA | rs35429781 | chr3:46253607 | A/C | 4.89E-7 | 1024 | 22.03 | 18.4 | 21.33 | KM Plot |
| BRCA | rs35511592 | chr3:46334846 | G/A | 3.11E-6 | 1027 | 22.02 | 18.4 | 20.4 | KM Plot |
| BRCA | rs35570822 | chr7:54843468 | GT/G | 8.08E-6 | 1028 | 21.43 | 24.23 | 12.17 | KM Plot |
| BRCA | rs35646896 | chr3:46320120 | G/T | 3.07E-6 | 1028 | 22.03 | 18.4 | 20.4 | KM Plot |
| BRCA | rs35807694 | chr2:86505779 | G/T | 2.62E-6 | 1024 | 21.97 | 19.47 | 12.17 | KM Plot |
| BRCA | rs35895982 | chr20:2754627 | C/T | 1.35E-5 | 1021 | 22.15 | 20.73 | 12.32 | KM Plot |
| BRCA | rs35943273 | chr2:86505816 | G/C | 2.79E-6 | 1023 | 21.95 | 19.47 | 12.17 | KM Plot |
| BRCA | rs36078103 | chr3:46311782 | C/T | 3.07E-6 | 1028 | 22.03 | 18.4 | 20.4 | KM Plot |
| BRCA | rs372370838 | chr18:44660213 | ATTTG/A | 2.03E-5 | 1022 | 21.73 | 22.2 | 18.03 | KM Plot |
| BRCA | rs375018719 | chr7:26511396 | CAAAGAA/C | 1.66E-5 | 1023 | 21.17 | 27.37 | 33 | KM Plot |
| BRCA | rs3800125 | chr6:1906861 | C/T | 2.76E-7 | 1028 | 6.3 | 16.17 | 22.63 | KM Plot |
| BRCA | rs3809965 | chr18:44676872 | G/A | 5.05E-6 | 1027 | 21.7 | 21.67 | 18.23 | KM Plot |
| BRCA | rs3809966 | chr18:44677627 | C/T | 5.05E-6 | 1027 | 21.7 | 21.67 | 18.23 | KM Plot |